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Author SHA1 Message Date
w.pomp b950f4a39d - silence java warnings 
- renam View -> Imread in Python
 2026-08-07 15:26:12 +02:00
w.pomp a0d2359e55 - various fixes 2026-08-07 15:14:16 +02:00
w.pomp e4de76f26c - as_array_dyn lru caching 2026-08-04 18:29:56 +02:00
w.pomp 9f5f9debc5 - frame caching 2026-08-04 14:35:24 +02:00
w.pomp c975b1943f - add __len__ and axes to PyShape stub 2026-07-24 10:29:15 +02:00
w.pomp c16e71bf30 - add __len__ to PyShape 2026-07-22 17:31:36 +02:00
w.pomp b063a63869 - fixing PyShape 2026-07-22 16:59:04 +02:00
w.pomp 1471ec00af - fixing PyShape 2026-07-22 16:13:54 +02:00
w.pomp 0ed70edd3e - small updates 2026-07-22 15:43:12 +02:00
w.pomp a5ec4125f9 - small cosmetic changes 2026-07-22 13:40:27 +02:00
w.pomp 0d347b7967 - suppress most java warnings 2026-07-14 12:49:16 +02:00
w.pomp 25d2070ac3 - better python errors 2026-07-13 17:53:52 +02:00
w.pomp 916d301f1b - open tiff seq folders with bioformats_java by finding the first tiff recursively 
- make PyView serializable by skipping the ome field
- fix python tests
 2026-07-13 15:16:10 +02:00
w.pomp 0ce1187a43 - metadata 2026-07-13 13:41:02 +02:00
w.pomp ff7cd562af - implement shape in Rust 
- implement more readers
- fix downloading of bioformats jar
- (mostly) compatible with python version
 2026-07-13 13:40:34 +02:00
w.pomp 705ca16379 start using semver, fix doc.rs issue 2026-02-23 19:54:58 +01:00
Wim Pomp d2c725440c - bump ome-metadata dependency 
- add extract-ome cli subcommand
 2026-01-04 17:03:14 +01:00
Wim Pomp b1f8dd998b - test ome reading from some example files 2026-01-04 15:13:35 +01:00
Wim Pomp 8db873c425 - bump ome-metadata dependency 
- make Reader::new error instead of panic if file cannot be read
 2026-01-04 15:09:23 +01:00
Wim Pomp 3c14168878 - implement custom error types 
- less restrictive dependency versions
- some extra features and bugfixes for movie writing
- make python tests work again
 2026-01-04 13:59:57 +01:00
Wim Pomp 3dc8e6af04 - bump bioformats to 8.3.0 
- rust: command line binary, save as mp4, save as tiff, ome metadata, more methods for View, bugfixes, less unsafe code
- python: ome as dict
 2025-08-21 19:45:02 +02:00
Wim Pomp 24af64ac7e - make modules public 2025-04-27 20:14:57 +02:00
Wim Pomp 5195ccfcb5 - implement sliced views, including min, max, sum and mean operations 2025-04-27 20:07:49 +02:00
Wim Pomp 87e9715f97 - remove all readers but bioformats 
- open folder with sequence
 2025-02-19 21:28:59 +01:00
Wim Pomp 2247a994be - change to MIT license 
- thread local image reader instances
- add keywords and categories
- add python dependencies
- README
 2025-02-17 19:53:34 +01:00
Wim Pomp e5c6361086 Merge remote-tracking branch 'origin/rs' into rs 2025-02-16 23:03:55 +01:00
Wim Pomp 83ea9722f6 - some workarounds to get jars and shared libs in the right place for python 
- add most ndbioimage python code and use rs code as bfread
 2025-02-16 23:03:48 +01:00
Wim Pomp 372b816f93 - some workarounds to get jars and shared libs in the right place for python 
- add most ndbioimage python code and use rs code as bfread
 2025-02-16 23:02:40 +01:00
Wim Pomp fefdd6448b - added ome_xml method 
- some pyo3 methods
 2025-02-08 20:22:45 +01:00
Wim Pomp a3dfc075a8 - do not try java things when building for docs.rs 2025-02-03 16:27:24 +01:00
Wim Pomp 15eae99272 - do not try java things when building for docs.rs 2025-02-03 16:22:49 +01:00
wimpomp 1a8c3f22e5 Delete Cargo.lock 2025-02-03 16:21:58 +01:00
Wim Pomp b612d33a35 - do not try java things when building for docs.rs 2025-02-03 16:17:14 +01:00
Wim Pomp 3c22cf743a - rename ndbioimage 2025-02-03 15:52:03 +01:00
Wim Pomp dd5e2d393f - exclude tests on publish 2025-02-03 15:48:27 +01:00
Wim Pomp 45aa72d14c - exclude tests on publish 2025-02-03 15:45:29 +01:00
Wim Pomp 1aad79b441 - start rust rewrite 2025-02-03 15:41:25 +01:00
Wim Pomp 3db6dc8ee1 - start rust rewrite 2025-02-03 15:33:32 +01:00
Wim Pomp 4a6a15686c - slightly more robust czi metadata reading 2025-01-29 17:16:20 +01:00
Wim Pomp c34b52cb55 - bugfix: reading wrong frame in some cases when opened with custom axes argument 
- some more try except in czi metadata reading
- bugfix: Pos pattern in seqread
 2025-01-24 15:53:51 +01:00
Wim Pomp 00abb8a684 Merge remote-tracking branch 'origin/main' 
# Conflicts:
#	pyproject.toml
 2025-01-08 13:20:22 +01:00
Wim Pomp 8b280b3061 - make cache size configurable 2025-01-08 13:18:38 +01:00
Wim Pomp f75e1925b8 - make cache size configurable 2025-01-08 13:16:34 +01:00
Wim Pomp e6d5ec0928 - bump tiffwrite 2024-10-17 17:18:26 +02:00
Wim Pomp 814bb0da85 - slice notation for time argument on command line 
- fix seqread can_open
 2024-09-24 13:23:04 +02:00
Wim Pomp eea24e17ef - add metaseriesread 
- add function to get all positions/series in a file
- make sure mp4 dimensions are even
 2024-09-13 11:48:38 +02:00
Wim Pomp af600633cf - main: not parallel anymore (for now), make batch processing easier. 2024-09-11 14:23:41 +02:00
Wim Pomp be2c519951 - transforms bugfix: swap xy 
- save as movie: progress bar
- swap command line argument out for --write
 2024-07-11 10:13:19 +02:00
Wim Pomp 1d2cc951fa - save as mp4 or mkv movie 2024-06-04 19:11:40 +02:00
Wim Pomp e257ec326d - catch 0 timeinterval 
- better error handling in JVM
 2024-05-30 11:02:38 +02:00