85 lines
3.6 KiB
TOML
85 lines
3.6 KiB
TOML
[package]
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name = "ndbioimage"
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version.workspace = true
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edition.workspace = true
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rust-version.workspace = true
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authors.workspace = true
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license.workspace = true
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description.workspace = true
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repository.workspace = true
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documentation.workspace = true
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keywords.workspace = true
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categories.workspace = true
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readme = "../README.md"
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exclude = ["/tests"]
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[lib]
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name = "ndbioimage"
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crate-type = ["cdylib", "rlib"]
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[dependencies]
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bioformats = { version = "0.1", optional = true, default-features = false, features = ["zarr", "tissuefaxs"] }
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clap = { version = "4", features = ["derive"] }
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console = { version = "0.16", optional = true }
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downloader = { version = "0.2", optional = true, default-features = false, features = ["rustls-tls"] }
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ffmpeg-sidecar = { version = "2", optional = true }
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itertools = "0.15"
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image-registration = { path = "../image-registration", version = "0.1", optional = true }
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indexmap = { version = "2", features = ["serde"] }
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indicatif = { version = "0.18", features = ["rayon"], optional = true }
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j4rs = { version = "0.25", optional = true }
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libczirw-sys = { version = "0.5.2", optional = true }
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ndarray = { version = "0.17", features = ["serde"] }
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num = "0.4"
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numpy = { version = "0.29", optional = true }
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ome-metadata = "0.6"
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ordered-float = { version = "5", optional = true }
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phf = { version = "0.14", features = ["macros"] }
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postcard = { version = "1", features = ["use-std"], optional = true }
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pyo3 = { version = "0.29", features = ["abi3-py310", "anyhow", "generate-import-lib", "multiple-pymethods"], optional = true }
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pyo3-stub-gen = { version = "0.23", optional = true }
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rayon = { version = "1", optional = true }
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regex = "1"
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serde = { version = "1", features = ["rc", "derive"] }
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serde_with = "3"
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strum = { version = "0.28", features = ["derive"] }
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thiserror = "2"
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tiff = { package = "ndbioimage-tiff", path = "../image-tiff", version = "0.11", features = ["zstd"], optional = true }
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tiffwrite = { version = "2026.6.0", optional = true }
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tokio = { version = "1", features = ["rt", "rt-multi-thread"], optional = true }
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thread_local = { version = "1", optional = true }
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xmltree = { version = "0.12", optional = true }
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yaml_serde = { version = "0.10", optional = true }
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# "bioformats 0.1.8" is written for "zip 2.4.x", where zip::read::ZipFile has a single lifetime parameter.
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# "zip >= 2.5" added a second "R: Read" generic (2.6.1 breaks bioformats), so the build fails.
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zip = { version = "=2.4.2", optional = true, default-features = false }
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[dev-dependencies]
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rayon = "1"
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regex = "1"
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postcard = { version = "1", features = ["use-std"] }
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[build-dependencies]
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j4rs = "0.25"
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ffmpeg-sidecar = "2"
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retry = "2"
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toml = "1"
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[features]
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default = ["bioformats_java", "gpl-formats", "czi", "tiff", "tiffseq", "movie", "tiffwrite"]
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all = ["bioformats_java", "bioformats_rust", "czi", "gpl-formats", "movie", "tiffseq", "tiffwrite", "tiff", "transforms"]
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gpl-formats = []
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python = ["dep:pyo3", "dep:numpy", "dep:pyo3-stub-gen", "dep:postcard", "ome-metadata/python"]
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czi = ["dep:libczirw-sys", "dep:xmltree", "dep:thread_local"]
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bioformats_rust = ["dep:bioformats", "dep:thread_local", "dep:zip"]
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bioformats_java = ["dep:j4rs", "dep:thread_local", "dep:downloader"]
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tiffwrite = ["dep:tiffwrite", "dep:indicatif", "dep:console", "dep:rayon"]
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tiffseq = ["dep:tiff", "dep:yaml_serde"]
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tiff = ["dep:tiff", "dep:thread_local"]
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movie = ["dep:ffmpeg-sidecar", "dep:tokio", "dep:ordered-float", "dep:indicatif", "dep:console"]
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transforms = ["dep:image-registration", "dep:yaml_serde"]
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[package.metadata.docs.rs]
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no-default-features = true
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features = ["bioformats_java", "bioformats_rust", "czi", "movie", "tiffseq", "tiffwrite", "tiff", "transforms"]
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