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  • a6457ea497 - Slicing bugfix. Wim Pomp 2023-11-21 16:08:57 +01:00
  • 5a34adef7b - Slicing bugfix. - Sort imports. - Make sitk-elastix optional again. Wim Pomp 2023-11-20 14:47:47 +01:00
  • 2dccbf1cef - Include scikit-image dependency. Wim Pomp 2023-11-02 15:09:16 +01:00
  • d13b702481 - Improve transforms, implement drift correction transforms, require from_ methods for instantiation. - Replace transform, drift and beadfile arguments for Imread by with_transform method. - Bring Imread.transpose in line with numpy.transpose. - Fix seqread.lazy_property. Wim Pomp 2023-11-02 15:05:40 +01:00
  • 2e56f45f3e - Improve speed of saving transformed images by parallelization. - Remove piezoval. - cziread: make color optional. Wim Pomp 2023-10-30 16:53:09 +01:00
  • 7797f38a59 - transforms bugfixes Wim Pomp 2023-10-12 14:55:37 +02:00
  • 96ab3174d7 - bugfix in czi metadata reader - cziread now gives empty frame if the frame wasn't saved in the file - astype accepts extra arguments, but does not use them - improved jvm handling - tifread dtype fix Wim Pomp 2023-09-04 10:26:10 +02:00
  • ef6116c6bc - some ome fixes Wim Pomp 2023-08-21 11:14:32 +02:00
  • cf7f2b6e1e - remove list of views from base - fix frame_decorator in views - use transforms and frame_decorators as cache keys Wim Pomp 2023-08-19 12:08:04 +02:00
  • 3dbed27078 - bump ome-types to 0.4 Wim Pomp 2023-08-18 18:30:15 +02:00
  • bb1a710463 - github workflow Wim Pomp 2023-08-18 18:12:53 +02:00
  • ff6c1aa8a8 - base & view model for imread - transforms bugfix - implement (nan)var and (nan)std - add tests Wim Pomp 2023-08-18 18:10:42 +02:00
  • bdd7a5399c - set dtype according to pixel type in file - cziread bugfix - add reader for broken files saved by Fiji - make ndread work for arrays with less dimensions than 5 - relative imports - remove some old functions - make bfread check if it can open the file Wim Pomp 2023-08-14 17:01:03 +02:00
  • 0bd22d766a - fix seqread bug Wim Pomp 2023-07-20 10:22:55 +02:00
  • dbe80c495b - do_copy class attribute to force copy of ome - more ome parts optional - reading closed file raises an error Wim Pomp 2023-07-11 17:20:03 +02:00
  • b629f98727 - seqread: lazily read delta_t - calculate timeinterval more efficiently - remove timeval field - bugfix in retrieving laser wavelenghts and powers - add series/pos to summary - cziread: better assign lightsources to channels Wim Pomp 2023-07-05 12:34:43 +02:00
  • 8a74698fa5 - seqread bugfix where dimensions were mixed up - seqread load metadata in parallel in Wim Pomp 2023-07-04 16:24:17 +02:00
  • f40f7e501b - readme changes Wim Pomp 2023-06-29 14:34:54 +02:00
  • 506b449f4d - read metadata into ome structure - pytest - use pathlib - series as part of the path: path/PosN - summary only shows some available metadata - allow dict in Imread[dict(c=c, z=z, t=t)] - bfread in different process so the user can start another jvm - deal with multiple images (series/positions) in czi files - use jpype instead of javabridge/bioformats - poetry for install Wim Pomp 2023-06-29 14:23:03 +02:00
  • 33ddb845ae - Bugfix for transforms. - Make a list of attributes not to copy --> faster slicing. - isclosed attribute. - disable __del__ for now because it doesn't play nice with multiprocessing Wim Pomp 2022-07-17 12:13:31 +02:00
  • 7c35741450 - First commit Wim Pomp 2022-07-15 14:18:43 +02:00
  • 8d402e9dc0 Initial commit wimpomp 2022-07-15 13:39:18 +02:00