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# ndbioimage
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[](https://git.pomppervova.nl/wim/ndbioimage/actions?workflow=pytest.yml)
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[](https://github.com/pomppervova/ndbioimage/actions/workflows/pytest.yml)
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# NDBioImage
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## Work in progress
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## Work in progress
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Rust rewrite of python version. Read bio image formats using the bio-formats java package.
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Rust rewrite of python version. Read bio image formats using some Rust code, the libczi api, and if needed the
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[https://www.openmicroscopy.org/bio-formats/](https://www.openmicroscopy.org/bio-formats/)
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bio-formats java package.
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Exposes (bio) images as a numpy ndarray-like object (Python) or a struct that can be sliced like an ndarray Array
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Exposes (bio) images as a numpy ndarray-like object (Python) or a struct that can be sliced like an ndarray Array
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(Rust), but without loading the whole image into memory, reading from the file only when needed. Some metadata is read
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(Rust), but without loading the whole image into memory, reading from the file only when needed. Some metadata is read
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@@ -18,20 +17,6 @@ Currently, it supports imagej tif files, czi files, micromanager tif sequences a
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To transition to semver, versions before 0.1.0 were yanked from crates.io.
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To transition to semver, versions before 0.1.0 were yanked from crates.io.
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## Installation
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```sh
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pip install ndbioimage
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```
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### Installation with option to write mp4 or mkv:
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Work in progress! Make sure ffmpeg is installed.
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```sh
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pip install ndbioimage[write]
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```
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## Usage
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## Usage
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### Python
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### Python
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