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ndbioimage/.github/workflows/publish_pypi.yml
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2026-10-28 14:04:37 +01:00

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name: Publish_py
on: [ workflow_dispatch ]
permissions:
contents: read
jobs:
pypi_publish:
name: Publish (pypi.org)
runs-on: ubuntu-latest
env:
CARGO_HOME: ${{ github.workspace }}/.cargo
RUSTUP_HOME: ${{ github.workspace }}/.rustup
RUSTUP_TOOLCHAIN: stable
steps:
- uses: actions/checkout@v6
with:
submodules: true
- uses: actions/setup-python@v5
with:
python-version: 3.x
- name: Restore cache
uses: actions/cache/restore@v4
with:
path: |
~/.cache/pip
~/.cache/pip-wheel
~/.cache/sccache
~/.cache/cargo-xwin
${{ env.CARGO_HOME }}
~/.osxcross
key: cache-ubuntu-maturin-cross-compile
- name: Install llvm, cmake and clang
run: |
if ! command -v llvm-dlltool >/dev/null 2>&1; then
sudo apt update
sudo apt install -y llvm cmake build-essential libclang-dev clang
fi
shell: bash
- name: Install Rust
run: |
export PATH="$CARGO_HOME/bin:$PATH"
if ! command -v rustup >/dev/null 2>&1; then
curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y
fi
rustup toolchain install stable --profile minimal
rustup default stable
echo "$CARGO_HOME/bin" >> "$GITHUB_PATH"
cargo --version
shell: bash
- name: Install sccache and maturin
run: |
python -m pip install --upgrade pip
# ziglang >= 0.17 ships a bundled libc++ that requires -D_LIBCPP_* config
# macros only cargo-zigbuild >= 0.24.0 passes to bindgen; otherwise
# libczirw-sys fails with "hardening.h ... _LIBCPP_ASSERTION_SEMANTIC_DEFAULT
# is not defined". Pin the combo that is known to work.
python -m pip install --upgrade maturin "ziglang==0.17.0" "cargo-zigbuild==0.24.0"
# in case an older copy was cargo-installed into the CARGO_HOME cache,
# prevent it from shadowing the pip-installed one
rm -f "${CARGO_HOME:?}/bin/cargo-zigbuild" || true
if ! command -v sccache >/dev/null 2>&1; then
cargo install sccache || pip install sccache
fi
shell: bash
- name: Install xwin
run: |
if ! command -v cargo-xwin >/dev/null 2>&1; then
cargo install cargo-xwin || pip install cargo-xwin
cargo xwin cache xwin
fi
shell: bash
- name: Install osxcross
run: |
export PATH="$HOME/.osxcross/bin:$PATH"
if [ ! -d "$HOME/.osxcross/bin" ]; then
wget ${{ secrets.OSXCROSS_LINK }} -O osxcross.tar.gz
tar -xzf osxcross.tar.gz -C ~/
mv ~/osxcross ~/.osxcross
fi
- name: Build wheels
env:
# ziglang >= 0.17's bundled libc++ needs these -D_LIBCPP_* macros when
# parsed by bindgen/libclang; cargo-zigbuild >= 0.24.0 supplies them, but
# the runner may still resolve an older 0.23.1 — pre-set them so any
# cargo-zigbuild version works (it appends its own flags to these)
BINDGEN_EXTRA_CLANG_ARGS_x86_64-apple-darwin: "-D_LIBCPP_ASSERTION_SEMANTIC_DEFAULT=_LIBCPP_ASSERTION_SEMANTIC_ENFORCE -D_LIBCPP_PSTL_BACKEND_SERIAL -D_LIBCPP_HAS_VENDOR_AVAILABILITY_ANNOTATIONS=0 -D_LIBCPP_HAS_TERMINAL -D_LIBCPP_HAS_RANDOM_DEVICE -D_LIBCPP_HAS_NO_STD_MODULES -D_LIBCPP_HAS_FILESYSTEM=1"
BINDGEN_EXTRA_CLANG_ARGS_aarch64-apple-darwin: "-D_LIBCPP_ASSERTION_SEMANTIC_DEFAULT=_LIBCPP_ASSERTION_SEMANTIC_ENFORCE -D_LIBCPP_PSTL_BACKEND_SERIAL -D_LIBCPP_HAS_VENDOR_AVAILABILITY_ANNOTATIONS=0 -D_LIBCPP_HAS_TERMINAL -D_LIBCPP_HAS_RANDOM_DEVICE -D_LIBCPP_HAS_NO_STD_MODULES -D_LIBCPP_HAS_FILESYSTEM=1"
BINDGEN_EXTRA_CLANG_ARGS_x86_64-unknown-linux-gnu: "-D_LIBCPP_ASSERTION_SEMANTIC_DEFAULT=_LIBCPP_ASSERTION_SEMANTIC_ENFORCE -D_LIBCPP_PSTL_BACKEND_SERIAL -D_LIBCPP_HAS_VENDOR_AVAILABILITY_ANNOTATIONS=0 -D_LIBCPP_HAS_TERMINAL -D_LIBCPP_HAS_RANDOM_DEVICE -D_LIBCPP_HAS_NO_STD_MODULES -D_LIBCPP_HAS_FILESYSTEM=1"
BINDGEN_EXTRA_CLANG_ARGS_aarch64-unknown-linux-gnu: "-D_LIBCPP_ASSERTION_SEMANTIC_DEFAULT=_LIBCPP_ASSERTION_SEMANTIC_ENFORCE -D_LIBCPP_PSTL_BACKEND_SERIAL -D_LIBCPP_HAS_VENDOR_AVAILABILITY_ANNOTATIONS=0 -D_LIBCPP_HAS_TERMINAL -D_LIBCPP_HAS_RANDOM_DEVICE -D_LIBCPP_HAS_NO_STD_MODULES -D_LIBCPP_HAS_FILESYSTEM=1"
BINDGEN_EXTRA_CLANG_ARGS_x86_64-unknown-linux-musl: "-D_LIBCPP_ASSERTION_SEMANTIC_DEFAULT=_LIBCPP_ASSERTION_SEMANTIC_ENFORCE -D_LIBCPP_PSTL_BACKEND_SERIAL -D_LIBCPP_HAS_VENDOR_AVAILABILITY_ANNOTATIONS=0 -D_LIBCPP_HAS_TERMINAL -D_LIBCPP_HAS_RANDOM_DEVICE -D_LIBCPP_HAS_NO_STD_MODULES -D_LIBCPP_HAS_FILESYSTEM=1"
BINDGEN_EXTRA_CLANG_ARGS_aarch64-unknown-linux-musl: "-D_LIBCPP_ASSERTION_SEMANTIC_DEFAULT=_LIBCPP_ASSERTION_SEMANTIC_ENFORCE -D_LIBCPP_PSTL_BACKEND_SERIAL -D_LIBCPP_HAS_VENDOR_AVAILABILITY_ANNOTATIONS=0 -D_LIBCPP_HAS_TERMINAL -D_LIBCPP_HAS_RANDOM_DEVICE -D_LIBCPP_HAS_NO_STD_MODULES -D_LIBCPP_HAS_FILESYSTEM=1"
shell: bash
run: |
export PATH="$HOME/.osxcross/bin:$PATH"
echo "HOME=$HOME CARGO_HOME=$CARGO_HOME RUSTUP_HOME=$RUSTUP_HOME"
command -v cargo-zigbuild || echo "cargo-zigbuild: not on PATH"
cargo-zigbuild --version 2>&1 || true
command -v rustup
command -v cargo
rustup show
cargo --version
rm -rf dist
maturin sdist --out dist -m ndbioimage/Cargo.toml
rustup target add x86_64-apple-darwin
maturin build --release --out dist --target x86_64-apple-darwin --zig --auditwheel repair -m ndbioimage/Cargo.toml
rustup target add aarch64-apple-darwin
maturin build --release --out dist --target aarch64-apple-darwin --zig --auditwheel repair -m ndbioimage/Cargo.toml
rustup target add x86_64-unknown-linux-gnu
# the x86_64-gnu build links the runner's host liblzma (lzma-sys), which needs
# glibc symbols up to 2.34 - higher than the default manylinux_2_17 baseline
maturin build --release --out dist --target x86_64-unknown-linux-gnu --zig --auditwheel repair --compatibility manylinux_2_34 -m ndbioimage/Cargo.toml
rustup target add aarch64-unknown-linux-gnu
maturin build --release --out dist --target aarch64-unknown-linux-gnu --zig --auditwheel repair --compatibility manylinux_2_34 -m ndbioimage/Cargo.toml
rustup target add x86_64-unknown-linux-musl
maturin build --release --out dist --target x86_64-unknown-linux-musl --zig --auditwheel repair -m ndbioimage/Cargo.toml
rustup target add aarch64-unknown-linux-musl
maturin build --release --out dist --target aarch64-unknown-linux-musl --zig --auditwheel repair -m ndbioimage/Cargo.toml
rustup target add x86_64-pc-windows-msvc
maturin build --release --out dist --target x86_64-pc-windows-msvc --auditwheel repair -m ndbioimage/Cargo.toml
rustup target add aarch64-pc-windows-msvc
maturin build --release --out dist --target aarch64-pc-windows-msvc --auditwheel repair -m ndbioimage/Cargo.toml
- name: Store cache
uses: actions/cache/save@v4
with:
path: |
~/.cache/pip
~/.cache/pip-wheel
~/.cache/sccache
~/.cache/cargo-xwin
${{ env.CARGO_HOME }}
~/.osxcross
key: cache-ubuntu-maturin-cross-compile
- name: Publish to PyPI
uses: pypa/gh-action-pypi-publish@release/v1
with:
password: ${{ secrets.PYPI_API_TOKEN }}
env:
GITHUB_WORKFLOW_REF: 1.10.1